PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.38372s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 287aa MW: 30919.4 Da PI: 5.8408

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.38372s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.6e-34	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Araha.38372s0001.1.p 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.303	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-32	14	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-18	14	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEGDNGGTNS SHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD MLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLGEPSAPVT GDSDPATPAP TSESPLQDKS 180 GKECGPDKSL SVDESLSSYR EPLTPDSGCN IGSPDESGGE ERLSKKPRLV RGAAGYTPDI 240 VVAHPILESG LNSSYHPSDH ALAFDQPSTS LLGAEDQLDK GSGDNL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084725	0.0	AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876730.1	0.0	myb family transcription factor
Swissprot	Q8GUN5	3e-50	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	D7LQZ5	0.0	D7LQZ5_ARALL; Myb family transcription factor
STRING	fgenesh2_kg.5__3__AT2G01060.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-176	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.38372s0001.1.p